I’m in a hurry right now, and won’t be posting much this week. But, I thought I’d dump some of the ADMIXTURE runs I have. This is one with 80,000 markers, and Eurasian populations, Papuans and Mozabites. I removed the New World and Africa to constrain the variance space. This time I’ve labelled the ancestral components, but do not take them totally literally. I think in the future I might just remove the Kalash to see what happens. This is K = 7. Not too busy, but I think enough K’s to separate out the various West Eurasian groups. Additionally I’ve put the genetic distances, Fst, below, and, visualized them on an MDS. Nothing too surprising.
Fst
Northeast Asian
South Asian
European
West Asian
Kalash
Southeast Asian
Papuan
Northeast Asian
0
0.1
0.13
0.142
0.137
0.052
0.225
South Asian
0.1
0
0.058
0.07
0.066
0.097
0.201
European
0.13
0.058
0
0.056
0.075
0.132
0.236
West Asian
0.142
0.07
0.056
0
0.098
0.139
0.238
Kalash
0.137
0.066
0.075
0.098
0
0.136
0.243
Southeast Asian
0.052
0.097
0.132
0.139
0.136
0
0.214
Papuan
0.225
0.201
0.236
0.238
0.243
0.214
0
